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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015875770.1_cds_XP_016435902.1_31814
CDS Infomation

[gene=LOC107762091] [db_xref=GeneID:107762091] [protein=shikimate O-hydroxycinnamoyltransferase-like] [protein_id=XP_016435902.1] [location=complement(join(30977..31948,34165..34602))] [gbkey=CDS]
Sequence

ATGTGTAGAAAAGAGATAACTACAAAAAGAAACTTCAATGTAAAGATGAGCAAGAGTGAA
GTGGTGGCAGCAGTTTTGCCAATACAAGAGCATTGGTTACCACTGTCCAATCTTGACTTG
CTCTTGCCTCCATTGGATGTTGGAGTTATTTTCTGTTATCAAAATCCCATTTCAGTGACA
ACAAAACTAGAATTTGGTTCAATGGTTAGAATTCTCAAATCTTCTTTGGCTGAAACATTA
GTTATTTACTATGCATTTGCTGGTGAGATAGTTCAGAACTTAGGTGGAGAACCTGAGGTT
CTTTGCAACAATAGTGGAGTCAATTTCACAGAAGCTTTTGCTGATGTTGAGCTCAAGGAT
ATTAACTTTTATAATCCAGATGAGAGTATAGAGGGAAAACTTGTTCCAAAGAAGAAGCAC
GGTGTACTAGCTGTTCAGGTTACACAACTTAAATGTGGAGGACTAGTTGTGGGTTGCACA
TTTGATCATCGAGTTGCTGATGCATATTCAGCCAACTTGTTTCTTGTATCATGGTCTGAA
TTAGCTCAATCCAAACCACTCTCTCAGCTCCCATCTTTCCGTCGATCGTTCCTTTTTCCT
CGACGTCCTGGTTACTACGATGACTCAATCGATGGCCTGTACGTACCAATACCAACCCTA
CCATCAGTAAAACCCGAAACCCTTAACCCTAACGATCTAGCCATAAGTAGAATTTACTAT
ATCACGGGGGAGAAAATGGGTCACCTTCAAGCACTAGCCAATCGTGACCAAAAAAGCACG
AAATTCCAGAGGTCTAAACTTGAATCATTCAGCGCTTACCTGTGGAAAACTATTGCATGT
GGAAGTAAAGAAACATCAAATTCCAAGAATTTCAGGTTTGGTATCGTTGTTGATGGTAGG
GCTAGATTAAGTAATGGAGATGATAATCAAGAAAAATTACTAAAAGGGTATTTTGGTAAT
GTTCTCTCAATCCCATTTGGAAACAAGAAAATTGAGGAGCTAAAAGAGAAGCCGTTGAGT
TGGGTAGCAAATTCAATTCATGAGTTTATAGAAAAAGCAGTAACACGCGAACATTTCCTT
GGATTGATAGATTGGGTTGAGGCCCATCGTCCTGAACAGGCCGTGGCGAAAATATACGCC
ACGGACGATGATGGACCCGCTGTGGTAGTGTCATCAGGGCAACAATTTCCAGCCAGAGAG
ATAGATTTCGGATGGGGTGAGCCAGTCTTCTGGTCGTATCATTTTCCATGGGCGGGAAAA
TCAGGATATGTGATGCCAATGCCAAGTCCTAAAGGAAATGGAGATTGGATTGTTTATATG
CATTTGATGAAATGGCAATTGGAACTAATTGAGACTTCTGCATCCCATGTGGTCAAGCCT
GTGACTGCAAATTATCTCAACTTAATGTGA

Peptide Sequence

PEP ID

XP_016435902.1
PEP Infomation

PREDICTED: shikimate O-hydroxycinnamoyltransferase-like [Nicotiana tabacum]
Sequence

MCRKEITTKRNFNVKMSKSEVVAAVLPIQEHWLPLSNLDLLLPPLDVGVIFCYQNPISVT
TKLEFGSMVRILKSSLAETLVIYYAFAGEIVQNLGGEPEVLCNNSGVNFTEAFADVELKD
INFYNPDESIEGKLVPKKKHGVLAVQVTQLKCGGLVVGCTFDHRVADAYSANLFLVSWSE
LAQSKPLSQLPSFRRSFLFPRRPGYYDDSIDGLYVPIPTLPSVKPETLNPNDLAISRIYY
ITGEKMGHLQALANRDQKSTKFQRSKLESFSAYLWKTIACGSKETSNSKNFRFGIVVDGR
ARLSNGDDNQEKLLKGYFGNVLSIPFGNKKIEELKEKPLSWVANSIHEFIEKAVTREHFL
GLIDWVEAHRPEQAVAKIYATDDDGPAVVVSSGQQFPAREIDFGWGEPVFWSYHFPWAGK
SGYVMPMPSPKGNGDWIVYMHLMKWQLELIETSASHVVKPVTANYLNLM

Transcript Sequence

Gene sequence data has not been registered.